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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_2335_4354_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2335 - 4354
Intron Length:
2020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCCACC
5'SS Class:
major
3'SS Sequence:
TTTCTGCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTAAT
U12 Branch Point Sequence:
AAGGCAGTAATA
Flanking Amino Acid:
DVYCYAEDLPEGTNSIPEAA
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.2
0.29
1.2
56.9
42.5
Major BPS
64.3
0.36
1.2
65.3
38.6
Major PPT
78.8
0.65
0.8
72.8
32.1
Minor 5ss
39.7
-1.2
3
52.9
44
Minor BPS
43.1
-0.5
2.2
51.75
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030819
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039206
51 - 4788
4738