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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_275055_275148_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
275055 - 275148
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
GTTTTCTCCATG
Flanking Amino Acid:
FTLKAGQMVTIWASGAGATH
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
72.6
38.9
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
84.2
0.77
0.7
77.1
31.6
Minor 5ss
33.8
-1.8
3
45.5
42.6
Minor BPS
48.5
-0.2
2
59.72
42.6

Associated Gene:

Gene:
LMNA
Ensembl Gene ID:
ENSAPLG00000009487
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009925
273176 - 275280
2105