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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_294996_296650_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
294996 - 296650
Intron Length:
1655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCGTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTCTTCTTAATT
Flanking Amino Acid:
YLQSLLQPKSSSLDSELTSL
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.4
31.8
Major BPS
80
0.75
1
78.6
31
Major PPT
67.9
0.4
1.1
71.9
33
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
83.3
1.12
1
91.07
32.9

Associated Gene:

Gene:
SMG5
Ensembl Gene ID:
ENSAPLG00000010263
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010739
286118 - 305367
19250