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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_297834_298705_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
297834 - 298705
Intron Length:
872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
TCTAAGTTAATT
Flanking Amino Acid:
YQALSVAPQIGMPFNQLGTL
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.8
34.4
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
85.4
0.8
0.8
79.7
32.4
Minor 5ss
34.3
-1.8
2.8
37.6
42.2
Minor BPS
49.9
0.07
2.2
73.4
43.7

Associated Gene:

Gene:
SMG5
Ensembl Gene ID:
ENSAPLG00000010263
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010739
286118 - 305367
19250