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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_298796_299863_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
298796 - 299863
Intron Length:
1068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
GGTTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GGTTTCTGATTT
Flanking Amino Acid:
HRCLVYLGDLARYQNELAGV
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
84.3
0.77
0.8
81.2
36.5
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
52.2
0.15
1.7
70.12
40.9

Associated Gene:

Gene:
SMG5
Ensembl Gene ID:
ENSAPLG00000010263
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010739
286118 - 305367
19250