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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_302470_303133_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
302470 - 303133
Intron Length:
664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATCTTTTCACCT
Flanking Amino Acid:
VIQLIKTNKKHIHSRSTLEC
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
86
30.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
84.7
0.78
0.7
77
31.8
Minor 5ss
36.8
-1.5
3.3
51.2
45.7
Minor BPS
49.7
0.06
1.8
69.47
42.1

Associated Gene:

Gene:
SMG5
Ensembl Gene ID:
ENSAPLG00000010263
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010739
286118 - 305367
19250