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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_303258_303872_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
303258 - 303872
Intron Length:
615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAACAC
U12 Branch Point Sequence:
TGTGGCTAAACA
Flanking Amino Acid:
FKPENISLRNKLRELCVKLM
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
72.5
39.9
Major BPS
53.3
0.08
1.1
61.3
34.4
Major PPT
78.9
0.65
0.8
76.7
31.9
Minor 5ss
41.3
-1
2.8
49.6
41
Minor BPS
49.9
-0
2.2
67.6
44.9

Associated Gene:

Gene:
SMG5
Ensembl Gene ID:
ENSAPLG00000010263
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010739
286118 - 305367
19250