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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_304001_305322_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
304001 - 305322
Intron Length:
1322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAGGGACA
5'SS Class:
weak_major
3'SS Sequence:
ACCCGTGCTGAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
ATCTCGTAAAAT
Flanking Amino Acid:
PSAISHRPGALLFMFLLPCR
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.9
0.12
1.4
54.5
44.3
Major BPS
61.3
0.28
1
62
30.6
Major PPT
53.8
0.09
1.1
52
36.5
Minor 5ss
33
-1.9
3.4
44.6
43.4
Minor BPS
47.8
-0
2.4
71.23
45.5

Associated Gene:

Gene:
SMG5
Ensembl Gene ID:
ENSAPLG00000010263
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010739
286118 - 305367
19250