Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_318178_318519_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

318178 - 318519

Intron Length:

342

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTATGACTT

5'SS Class:

major

3'SS Sequence:

TTTCCTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTGAT

U12 Branch Point Sequence:

TGATGTTGAAAG

Flanking Amino Acid:

ATAQKQKNCTSAVVFPNKIT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.9

0.59

68.5

42.2

Major BPS

78.6

0.71

1.2

71.4

45.1

Major PPT

90.5

0.91

0.6

88.7

20.5

Minor 5ss

44.5

-0.6

3.2

66.4

44.5

Minor BPS

45.5

-0.4

51.29

42.6

Associated Gene:

Gene:

HORMAD1

Ensembl Gene ID:

ENSAPLG00000009738

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044384

317828 - 327598

9771

ENSAPLT00000010150

318123 - 327598

9476