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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_319060_319606_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
319060 - 319606
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCCAACGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTGTTCCCAACG
Flanking Amino Acid:
NCPGSTQLVKWLVPGCPPCC
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
72
32.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
48.2
-0.1
1.7
52.7
41.8
Minor 5ss
38.2
-1.3
3.1
45.3
45.2
Minor BPS
47.7
-0.3
2
55.71
45.6

Associated Gene:

Gene:
HORMAD1
Ensembl Gene ID:
ENSAPLG00000009738
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010150
318123 - 327598
9476