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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_321011_321107_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
321011 - 321107
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTAAAAATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAAAA
Flanking Amino Acid:
KKYLRMIVLAVYTHPEDPQT
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81
33
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
67.1
0.38
1.1
57
46.5
Minor 5ss
36.5
-1.5
2.7
44.7
42.7
Minor BPS
71.1
0.66
1.3
76.99
33.4

Associated Gene:

Gene:
HORMAD1
Ensembl Gene ID:
ENSAPLG00000009738
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044384
317828 - 327598
9771
ENSAPLT00000010150
318123 - 327598
9476