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Intron Name: Anas_platyrhynchos_platyrhynchos_26_321135_321604_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

321135 - 321604

Intron Length:

470

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATCTA

5'SS Class:

strong_major

3'SS Sequence:

TGTTTGTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATAAT

U12 Branch Point Sequence:

ACATCTTTAATA

Flanking Amino Acid:

AVYTHPEDPQTITECYHFKF

Intron Amino Acid Position:

122

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.9

80.4

34.2

Major BPS

0.75

78.6

Major PPT

0.81

0.8

80.6

Minor 5ss

37.2

-1.5

3.1

49.8

46.4

Minor BPS

71.5

0.67

1.1

70.19

36.4

Associated Gene:

Gene:

HORMAD1

Ensembl Gene ID:

ENSAPLG00000009738

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044384

317828 - 327598

9771

ENSAPLT00000010150

318123 - 327598

9476