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Intron Name: Anas_platyrhynchos_platyrhynchos_26_324318_325316_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

324318 - 325316

Intron Length:

999

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAATTT

5'SS Class:

strong_major

3'SS Sequence:

ACAACTTTTACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAA

U12 Branch Point Sequence:

CTTTATTTAACA

Flanking Amino Acid:

DNRVNTLEAQEPGVPGGGDE

Intron Amino Acid Position:

302

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

27.7

Major BPS

79.5

0.73

0.9

36.9

Major PPT

72.5

0.51

64.8

40.4

Minor 5ss

43.2

-0.7

3.3

64.8

46.5

Minor BPS

73.2

0.72

1.4

80.03

36.1

Associated Gene:

Gene:

HORMAD1

Ensembl Gene ID:

ENSAPLG00000009738

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044384

317828 - 327598

9771

ENSAPLT00000010150

318123 - 327598

9476