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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_344639_344726_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
344639 - 344726
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGGGGG
5'SS Class:
major
3'SS Sequence:
TCCCTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTCCCCAAATAT
Flanking Amino Acid:
DAHIFCTLEQLEAEIGGCLD
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
56.5
42.5
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
74.6
0.55
0.7
69
24.8
Minor 5ss
29.3
-2.4
3.4
37.3
47.4
Minor BPS
39.5
-0.7
2.1
55.32
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021823
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023067
343959 - 346797
2839
ENSAPLT00000037025
343959 - 346797
2839
ENSAPLT00000025315
343959 - 347591
3633