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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_344890_344990_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
344890 - 344990
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCCGA
5'SS Class:
major
3'SS Sequence:
GTCCCTCCCCAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTGTC
U12 Branch Point Sequence:
TCCCTCCCCAAG
Flanking Amino Acid:
SLKPMNCPAHCLMFAHRPRS
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
57.7
43
Major BPS
27.4
-1.4
4.1
46.4
38.9
Major PPT
59.2
0.21
1
56.2
34
Minor 5ss
31.9
-2.1
3
35.6
43
Minor BPS
33.9
-1.4
2
34.32
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021823
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037025
343959 - 346797
2839