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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_345543_345662_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
345543 - 345662
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCCCT
5'SS Class:
major
3'SS Sequence:
CCCGACCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
TTTTCCCCACCC
Flanking Amino Acid:
ALRDHRRIGREQELFFFHKL
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
62.3
43.9
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
61.8
0.27
0.9
53.6
30.6
Minor 5ss
34.6
-1.7
3.1
40.8
45
Minor BPS
53
0.07
2.2
75.8
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021823
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023067
343959 - 346797
2839
ENSAPLT00000037025
343959 - 346797
2839
ENSAPLT00000025315
343959 - 347591
3633