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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_347440_347531_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
347440 - 347531
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGCGCCGA
5'SS Class:
major
3'SS Sequence:
GTTCTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
TCGCCCTGACCC
Flanking Amino Acid:
LLGAAPRRYRPQVAERLRLF
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.2
0.31
1.1
47
45
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
75.9
0.58
0.8
69.2
31.5
Minor 5ss
30.3
-2.3
3.1
29.9
43
Minor BPS
49.8
-0
1.8
60.56
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021823
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025315
343959 - 347591
3633