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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_352683_353962_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
352683 - 353962
Intron Length:
1280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTATCCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCCTTTATC
Flanking Amino Acid:
QPNKPWKKSQTSTNPKAALK
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
75.8
33.6
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
75.8
0.58
0.9
71
34.6
Minor 5ss
34.3
-1.8
3.2
43.2
38.3
Minor BPS
78.4
0.88
1.5
86.75
30.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002706
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002729
351999 - 358924
6926