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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_355412_356573_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
355412 - 356573
Intron Length:
1162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATAATAAAAA
Flanking Amino Acid:
EVLPEAASLVKDPSVSKSIE
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.2
26.3
Major BPS
80
0.75
1
78.6
31
Major PPT
90.3
0.91
0.6
88.5
21.1
Minor 5ss
37.7
-1.4
2.7
46.1
36.1
Minor BPS
44.4
-0.4
2.1
57.55
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002706
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002729
351999 - 358924
6926