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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_360860_361187_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
360860 - 361187
Intron Length:
328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCCAA
U12 Branch Point Sequence:
GTGTTGCCAAGT
Flanking Amino Acid:
KTNKCSLVWEGTAKDRSFGE
Intron Amino Acid Position:
631

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81.3
32.8
Major BPS
53
0.07
1.4
64.5
42.8
Major PPT
89.2
0.88
0.7
81.3
30.7
Minor 5ss
30.6
-2.2
2.6
36.7
40.4
Minor BPS
37.6
-0.8
2.4
56.94
45.5

Associated Gene:

Gene:
PRPF3
Ensembl Gene ID:
ENSAPLG00000002440
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002508
360713 - 372843
12131