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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_385641_385926_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
385641 - 385926
Intron Length:
286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCAAC
5'SS Class:
major
3'SS Sequence:
GTGCCACCACCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTGCCAC
U12 Branch Point Sequence:
CGTGCCACCACC
Flanking Amino Acid:
EDQDFNLSVYDPVPPPLIQT
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
68.8
38
Major BPS
43.9
-0.3
1.4
49.9
45.3
Major PPT
58.6
0.19
1
49
39.5
Minor 5ss
34.7
-1.7
2.9
43.8
43.8
Minor BPS
41.4
-0.6
2.2
52.11
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019128
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047717
383983 - 387126
3144