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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_416144_418650_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
416144 - 418650
Intron Length:
2507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
CTCACGTTGAGG
Flanking Amino Acid:
RWQQTQQNKESGLVYTEEEW
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
78.1
36.3
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
87
0.83
0.7
80.3
31.6
Minor 5ss
34.7
-1.7
3.3
49.7
46.3
Minor BPS
42.2
-0.7
2.4
46.58
46.6

Associated Gene:

Gene:
OTUD7B
Ensembl Gene ID:
ENSAPLG00000004627
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026473
398054 - 425508
27455
ENSAPLT00000004773
406353 - 425508
19156