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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_422007_422801_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
422007 - 422801
Intron Length:
795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CTTATCTGACTT
Flanking Amino Acid:
KWITLPCDTQAPLAQPESPT
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
84
0.85
0.9
75
39.9
Major PPT
80
0.67
0.7
73.7
31.4
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
49.1
0.01
1.8
68.71
42.7

Associated Gene:

Gene:
OTUD7B
Ensembl Gene ID:
ENSAPLG00000004627
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026473
398054 - 425508
27455
ENSAPLT00000004773
406353 - 425508
19156