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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_424100_424883_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
424100 - 424883
Intron Length:
784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCTGAGC
5'SS Class:
weak_major
3'SS Sequence:
AGTTTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAG
U12 Branch Point Sequence:
GTGGCTTTGAGT
Flanking Amino Acid:
KRKEREALVHRSAVRNRYRY
Intron Amino Acid Position:
860

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.2
0.17
1.3
52.9
44
Major BPS
60.1
0.25
1.6
60.7
45.9
Major PPT
80.7
0.69
0.8
74.5
35.8
Minor 5ss
28
-2.5
3
35.8
40.4
Minor BPS
50.9
0.11
1.8
66.97
44.5

Associated Gene:

Gene:
OTUD7B
Ensembl Gene ID:
ENSAPLG00000004627
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004773
406353 - 425508
19156