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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_425022_425409_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
425022 - 425409
Intron Length:
388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTAACTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TTTTTTGTAACT
Flanking Amino Acid:
GGQRAPRGTGRSRTGLDPRS
Intron Amino Acid Position:
906

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
75.1
41.1
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
74
0.54
0.9
68.3
37.6
Minor 5ss
37.2
-1.4
3.1
49.5
46.7
Minor BPS
69.1
0.68
2
90.89
33.1

Associated Gene:

Gene:
OTUD7B
Ensembl Gene ID:
ENSAPLG00000004627
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004773
406353 - 425508
19156