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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_435218_435553_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
435218 - 435553
Intron Length:
336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTGGTTTTAAAT
Flanking Amino Acid:
KAICFLRPTKENVEYLIQEL
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
70.2
40.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.2
0.79
0.9
84.6
36
Minor 5ss
32
-2.1
3.2
43
44.2
Minor BPS
56.3
0.28
1.5
68.97
42.3

Associated Gene:

Gene:
VPS45
Ensembl Gene ID:
ENSAPLG00000002351
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002414
435170 - 454770
19601