Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_435615_436668_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

435615 - 436668

Intron Length:

1054

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTAAGTGCA

5'SS Class:

major

3'SS Sequence:

TGTTCTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACCTGAC

U12 Branch Point Sequence:

AGCACCTGACCG

Flanking Amino Acid:

RRPKYSIYFIYFSNVISKSD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.3

0.57

1.1

68.4

36.6

Major BPS

60.1

0.25

35.6

Major PPT

87.5

0.84

0.7

85.1

29.7

Minor 5ss

35.9

-1.6

3.2

51.5

44.9

Minor BPS

46.1

-0.4

1.8

48.38

44.5

Associated Gene:

Gene:

VPS45

Ensembl Gene ID:

ENSAPLG00000002351

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002414

435170 - 454770

19601