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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_437206_437476_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
437206 - 437476
Intron Length:
271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTGAA
U12 Branch Point Sequence:
TCAGATTGAACC
Flanking Amino Acid:
FSLNLLGCCQGRNWDPAQLA
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.3
40.1
Major BPS
61.6
0.29
1.2
55.4
42
Major PPT
85.2
0.79
0.7
76.8
31.9
Minor 5ss
37.7
-1.4
3.1
47.3
48.3
Minor BPS
48
-0.1
1.7
56.78
41.7

Associated Gene:

Gene:
VPS45
Ensembl Gene ID:
ENSAPLG00000002351
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002414
435170 - 454770
19601