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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_439981_442915_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
439981 - 442915
Intron Length:
2935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTTCA
5'SS Class:
major
3'SS Sequence:
CCCTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
ACATCCTTCAAA
Flanking Amino Acid:
CQNDHSSALQNVRRLLQNPK
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.2
68.8
38.9
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
81.6
0.71
0.7
75.8
26.2
Minor 5ss
45
-0.5
2.8
59.8
44.6
Minor BPS
54.4
0.13
1.9
63.94
42.1

Associated Gene:

Gene:
VPS45
Ensembl Gene ID:
ENSAPLG00000002351
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002414
435170 - 454770
19601