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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_444261_448834_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
444261 - 448834
Intron Length:
4574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGGG
5'SS Class:
strong_major
3'SS Sequence:
GCCTTCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
TTCTCCTTGACC
Flanking Amino Acid:
PYLGPNTLRDRPQDIIVFII
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
67.3
44.3
Major BPS
75
0.62
1.1
77.2
36
Major PPT
76.2
0.59
0.9
69.5
35.4
Minor 5ss
31
-2.2
3.3
40.6
45.6
Minor BPS
84.3
1.06
1
85.95
32.4

Associated Gene:

Gene:
VPS45
Ensembl Gene ID:
ENSAPLG00000002351
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002414
435170 - 454770
19601