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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_471302_471572_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
471302 - 471572
Intron Length:
271

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCACCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CCTATTTTAAAA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.9
82.7
36.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73
0.52
0.9
66.6
34.2
Minor 5ss
33.5
-1.9
4.2
55.8
48.4
Minor BPS
55
0.15
1.5
60.21
40.1

Associated Gene:

Gene:
PLEKHO1
Ensembl Gene ID:
ENSAPLG00000002526
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002538
461057 - 471815
10759