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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_506149_507957_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
506149 - 507957
Intron Length:
1809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTCCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TATGCCATACCT
Flanking Amino Acid:
VEEGGDEEEEAEGIRGEKRK
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
80.6
0.69
0.7
80.5
24.8
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
54.8
0.23
2
78.13
43.8

Associated Gene:

Gene:
ANP32E
Ensembl Gene ID:
ENSAPLG00000002620
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002645
506081 - 511545
5465