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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_564704_569729_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
564704 - 569729
Intron Length:
5026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTCAAACCA
5'SS Class:
weak_major
3'SS Sequence:
CCTAAATCAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAC
U12 Branch Point Sequence:
AAACCCTAAATC
Flanking Amino Acid:
GGGGAGSCLLPPSQ
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.4
0.13
1.4
49.5
41.4
Major BPS
52.9
0.07
1.1
59.6
32.7
Major PPT
62.2
0.27
1
55.7
38.7
Minor 5ss
26.6
-2.7
2.8
23.9
36.3
Minor BPS
54.5
0.12
1.7
60.65
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020034
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035531
564691 - 571705
7015