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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_567296_568844_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
567296 - 568844
Intron Length:
1549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TGTAATAAAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.8
80.1
28.5
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
88
0.85
0.6
87.3
23.2
Minor 5ss
45.4
-0.5
2.7
60.6
44.5
Minor BPS
43.8
-0.4
2
57.92
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020034
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025351
563764 - 571870
8107