Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_568954_569485_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

568954 - 569485

Intron Length:

532

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTGCG

5'SS Class:

strong_major

3'SS Sequence:

TTCCTCCTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTCAC

U12 Branch Point Sequence:

TGGTGCTCACCC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

65.8

40.2

Major BPS

69.8

0.49

1.1

71.3

36.7

Major PPT

85.9

0.81

0.7

80.7

24.6

Minor 5ss

27.1

-2.6

2.9

24.3

36.8

Minor BPS

45.9

-0.3

2.2

59.13

45.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020034

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025351

563764 - 571870

8107