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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_616359_619164_R

Intron Information:

Intron Rank:
139019
Intron Class:
major
Intron Phase:
Intron Coordinates:
616359 - 619164
Intron Length:
2806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
ACTTCATTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
CTTTCTCTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
76
0.59
0.8
69.7
35.1
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
53.3
0.18
2
75.83
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022275
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024022
615208 - 624574
9367