About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_622707_624504_R

Intron Information:

Intron Rank:
139021
Intron Class:
major
Intron Phase:
Intron Coordinates:
622707 - 624504
Intron Length:
1798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTATC
5'SS Class:
major
3'SS Sequence:
TGTTTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TGTATATTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
79.1
34.5
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
85.6
0.8
0.9
80.6
37
Minor 5ss
42.7
-0.8
2.5
54.7
42.5
Minor BPS
66.3
0.59
1.6
82.78
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022275
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024022
615208 - 624574
9367