Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_655742_655820_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

655742 - 655820

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTGCG

5'SS Class:

strong_major

3'SS Sequence:

CCTCATCCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAT

U12 Branch Point Sequence:

TGTCCCTCATCC

Flanking Amino Acid:

QQTLYFGEKRALRDNRIQLQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.8

0.94

0.8

74.9

35.3

Major BPS

0.5

1.1

71.2

35.2

Major PPT

70.8

0.47

0.8

61.4

34.7

Minor 5ss

27.6

-2.6

32.2

42.5

Minor BPS

55.5

0.15

1.9

69.5

41.3

Associated Gene:

Gene:

CADM3

Ensembl Gene ID:

ENSAPLG00000017996

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043460

640680 - 660975

20296

ENSAPLT00000040610

640680 - 660975

20296

ENSAPLT00000033576

640680 - 660975

20296