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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_656314_656531_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
656314 - 656531
Intron Length:
218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGGGTGCC
5'SS Class:
major
3'SS Sequence:
CCTGTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
TCACCTCCAACG
Flanking Amino Acid:
RWKKGNKELKAEGTEDHESL
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
62.7
37.5
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
71.9
0.49
0.8
64.7
31
Minor 5ss
26.7
-2.7
3.2
26.6
36.8
Minor BPS
45.4
-0.4
1.9
50.84
43.1

Associated Gene:

Gene:
CADM3
Ensembl Gene ID:
ENSAPLG00000017996
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043460
640680 - 660975
20296
ENSAPLT00000040610
640680 - 660975
20296
ENSAPLT00000033576
640680 - 660975
20296