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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_656703_656802_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
656703 - 656802
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTACGTGGC
5'SS Class:
major
3'SS Sequence:
GCTCCTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
GGGCGCTCACCC
Flanking Amino Acid:
RSTTQKLQVHYKPTAKIEPH
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.3
0.32
1.2
55.6
43
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
79.3
0.66
0.8
72.7
32
Minor 5ss
34.9
-1.7
3.5
52.7
44.6
Minor BPS
40.3
-0.7
2.1
45.69
42.5

Associated Gene:

Gene:
CADM3
Ensembl Gene ID:
ENSAPLG00000017996
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043460
640680 - 660975
20296
ENSAPLT00000040610
640680 - 660975
20296
ENSAPLT00000033576
640680 - 660975
20296