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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_657283_659659_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
657283 - 659659
Intron Length:
2377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGGGG
5'SS Class:
major
3'SS Sequence:
GCCTCCTGGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCCC
U12 Branch Point Sequence:
TTCTCCCTCTCT
Flanking Amino Acid:
VVAKYNLDVSDASPVPSTSS
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
59.1
45.8
Major BPS
33.6
-1
4.2
71.3
36.7
Major PPT
60.7
0.24
1.1
56.8
38.7
Minor 5ss
29.1
-2.4
3.5
38.2
46.7
Minor BPS
40.8
-0.6
3.7
76.35
46.1

Associated Gene:

Gene:
CADM3
Ensembl Gene ID:
ENSAPLG00000017996
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043460
640680 - 660975
20296