Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_659006_659659_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

659006 - 659659

Intron Length:

654

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACCGTAA

5'SS Class:

major

3'SS Sequence:

GCCTCCTGGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCCC

U12 Branch Point Sequence:

TTCTCCCTCTCT

Flanking Amino Acid:

ASSFTPAPAQDASPVPSTSS

Intron Amino Acid Position:

323

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.5

0.41

1.2

Major BPS

33.6

-1

4.2

71.3

36.7

Major PPT

60.7

0.24

1.1

56.8

38.7

Minor 5ss

40.5

-1.1

3.4

55.4

48.8

Minor BPS

40.8

-0.6

3.7

76.35

46.1

Associated Gene:

Gene:

CADM3

Ensembl Gene ID:

ENSAPLG00000017996

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033576

640680 - 660975

20296

ENSAPLT00000040610

640680 - 660975

20296