Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_669872_670084_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

669872 - 670084

Intron Length:

213

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAC|GCCGGTGGA

5'SS Class:

weak_major

3'SS Sequence:

CCGGTGCCAGGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATGCCAT

U12 Branch Point Sequence:

TCTGGCCGGATG

Flanking Amino Acid:

MQPAPSLSPLPD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.1

0.12

61.2

40.3

Major BPS

53.4

0.08

1.4

64.2

Major PPT

44.4

-0.3

1.7

43.4

37.5

Minor 5ss

17.1

-3.8

3.7

21.1

29.5

Minor BPS

-1

2.1

43.29

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017213

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038345

669865 - 674962

5098