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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_678621_680758_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
678621 - 680758
Intron Length:
2138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTGGCTCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCAAAC
U12 Branch Point Sequence:
TTGGGGCAAACG
Flanking Amino Acid:
YSPRVDPEYLGRVRIEEGAS
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67
39
Major BPS
43.9
-0.3
1.2
44.7
36.8
Major PPT
66.7
0.38
1
61.7
40
Minor 5ss
28.1
-2.5
3.1
35.3
41.4
Minor BPS
33.4
-1.4
2.6
42.97
48.3

Associated Gene:

Gene:
IGSF9
Ensembl Gene ID:
ENSAPLG00000027030
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024786
678154 - 683113
4960