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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_682390_682469_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
682390 - 682469
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGACCA
5'SS Class:
major
3'SS Sequence:
CCCTTCCCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAC
U12 Branch Point Sequence:
CCCCCCAAAATC
Flanking Amino Acid:
RDGRPLELGKLPGWSARPDG
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.5
40.4
Major BPS
61.7
0.29
1
63.7
32.3
Major PPT
70
0.45
0.9
62.6
33.2
Minor 5ss
31.2
-2.2
3.2
40.4
45.2
Minor BPS
43.8
-0.4
1.9
47.87
42.4

Associated Gene:

Gene:
IGSF9
Ensembl Gene ID:
ENSAPLG00000027030
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024786
678154 - 683113
4960