Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_690315_690625_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

690315 - 690625

Intron Length:

311

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTACA

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCCTCAT

U12 Branch Point Sequence:

TGTGCCTCATTT

Flanking Amino Acid:

NIYEEKRYLSWSALLGFGQP

Intron Amino Acid Position:

828

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.82

0.8

78.5

30.1

Major BPS

64.6

0.36

1.3

67.6

40.6

Major PPT

89.8

0.89

0.6

85.3

22.1

Minor 5ss

30.7

-2.2

2.5

31.6

35.9

Minor BPS

51.6

0.13

1.9

72.89

44.2

Associated Gene:

Gene:

CCT3

Ensembl Gene ID:

ENSAPLG00000009108

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030880

689247 - 694484

5238

ENSAPLT00000009516

690146 - 699197

9052

ENSAPLT00000043765

689247 - 693164

3918

ENSAPLT00000035985

690146 - 699949

9804