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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_690904_691007_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
690904 - 691007
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTCGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATAAAT
U12 Branch Point Sequence:
CTGGCATAAATA
Flanking Amino Acid:
DDEYTPTIFETFSLVAESRN
Intron Amino Acid Position:
736

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
62.2
0.3
1.1
68.9
33
Major PPT
71.6
0.49
0.9
65.3
36.2
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
46
-0.3
2
55.55
44.2

Associated Gene:

Gene:
CCT3
Ensembl Gene ID:
ENSAPLG00000009108
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035985
690146 - 699949
9804
ENSAPLT00000030880
689247 - 694484
5238
ENSAPLT00000009516
690146 - 699197
9052
ENSAPLT00000043765
689247 - 693164
3918