Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_697858_698458_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

697858 - 698458

Intron Length:

601

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

TGCATCCATACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGCAT

U12 Branch Point Sequence:

TATTCCAGAACC

Flanking Amino Acid:

TNDGNAILREIQVQHPAAKS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.4

1.02

0.7

87.4

21.4

Major BPS

0.62

1.4

85.7

34.9

Major PPT

69.1

0.43

61.8

Minor 5ss

39.3

-1.2

2.9

45.2

Minor BPS

65.2

0.46

1.7

78.24

36.4

Associated Gene:

Gene:

CCT3

Ensembl Gene ID:

ENSAPLG00000009108

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035985

690146 - 699949

9804

ENSAPLT00000009516

690146 - 699197

9052