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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_702862_703409_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
702862 - 703409
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGAATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGTTGTTGAATT
Flanking Amino Acid:
LQYNIYNVGSSAALDVELSD
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
72.7
44.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
71.6
0.49
1
67.8
42.5
Minor 5ss
42.4
-0.8
3.5
64.4
47
Minor BPS
57.1
0.3
1.9
77.3
39.6

Associated Gene:

Gene:
SSR2
Ensembl Gene ID:
ENSAPLG00000012456
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012983
702707 - 704647
1941