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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_26_707737_708009_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
707737 - 708009
Intron Length:
273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
CTTTCTTCAAAC
Flanking Amino Acid:
TQPTFFLYKSGVYDDPRCTQ
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
77.1
37.8
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
83.3
0.75
0.9
77.1
37.1
Minor 5ss
42.9
-0.8
2.8
59.8
44.7
Minor BPS
61.7
0.35
1.7
71.74
39.5

Associated Gene:

Gene:
CTSS
Ensembl Gene ID:
ENSAPLG00000012624
Chromosome:
26

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013159
706982 - 710691
3710